SNP Profiles matching UF 712

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 Key

 1234567891011121314
_Input profile
CCAACCGGTTCCCCAACCTTAAGGAACC
1._RUQ_1638
CCAACCGGTTCCCCAACCTTAAGGAACC
2._RUQ_1638
CCAACCGGTTCCCCAACCTTAAGGAACC
3._RUQ_1638
__CCGGTTCCCCAACCTT_GGAACC
4._RUQ_1683
__CCGGTTCCCCAACCTT_GGAACC
5._UF_712
CCAACCGGTTCCCC_CCTTAAGGAACC
6._UF_712
CCAACCGGTTCCCCAACCTTAAGGAACC
7._UF_712
CCAACCGGTTCCCCAACCTTAAGGAACC
8._UF_712
CCAACCGGTTCCCCAACCTTAAGGAACC
9._GC-01-089-5-06
CCAACCGGTTCCCCAACCTTAAGGAACC
10._GC-01-089-5-06
CCAACCGGTTCCCCAACCTTAAGGAACC
11._GC-01-089-5-06
CCAACCGGTTCCCCAACCTTAAGGAACC
12._UF_712
CCAACCGGTTCCCCAACCTTAAGGAACC
13._GC-01-089-5-06
CCAACCGGTTCCCCAACCTTAAGGAACC
14._LCT_EEN_90
CCAACCGGTTCC-AACCTTAAGGACCC
15._LCT_EEN_90
CCAACCGGTTCC_AACCTTAAGGACCC
16._RUQ_1379
__CCGGTTCCCCAACCTT_GGAACC
17._RUQ_469
__CCGGTTCCCCAACCTT_GGAACC
18._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
19._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
20._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
21._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
22._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
23._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
24._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
25._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
26._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
27._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
28._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
29._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
30._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
31._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
32._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
33._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
34._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
35._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
36._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
37._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
38._POUND_10
CCAACCGGTTCCGGAACCTTAAGGACCC
39._POUND_10
CCAACCGGTTCCGGAACCTTAAGGACCC
40._POUND_10
CCAACCGGTTCCGGAACCTTAAGGACCC
41._GC-05-069-2-20
CCAACCGGTTCCGGAACCTTAAGGACCC
42._GC-05-069-2-20
CCAACCGGTTCCGGAACCTTAAGGACCC
43._GC-05-069-2-20
CCAACCGGTTCCGGAACCTTAAGGACCC
 1516171819202122232425262728
_Input profile
GGGGCCCTGGGGGGTTCCTTTTAACCGG
1._RUQ_1638
GGGGCCCTGGGGGGTTCCTTTTAACCGG
2._RUQ_1638
GGGGCCCTGGGGGGTTCCTTTTAACCGG
3._RUQ_1638
GGGGCCCT_GGGGTT___AACC_
4._RUQ_1683
GGGGCCCT_GGGGTT___AACC_
5._UF_712
GGGGTTCTGGGGGGTTCCTTTTAACCGG
6._UF_712
GGGGCCCTAAGGGGTTCCTTTTAACCGG
7._UF_712
GGGGCCCTAAGGGGTTCCTTTTAACCGG
8._UF_712
GGGGCCCTAAGGGGTTCCTTTTAACCGG
9._GC-01-089-5-06
GGGGCCCTAAGGGGTTCCTTTTAACCGG
10._GC-01-089-5-06
GGGGCCCTAAGGGGTTCCTTTTAACCGG
11._GC-01-089-5-06
GGGGCCCTAAGGGGTTCCTTTTAACCGG
12._UF_712
GGGGCCCTAAGGGGTTCCTTTTAACCGG
13._GC-01-089-5-06
GGGGCCCTAAGGGGTTCCTTTTAACCGG
14._LCT_EEN_90
GGGGCCCTGGGGGGTTCCTTTTAACCGG
15._LCT_EEN_90
GGGGCCCTGGGGGGTTCCTTTTAACCGG
16._RUQ_1379
GTGGCCCT_GGGGTT___AACC_
17._RUQ_469
GTGGCCCT_GGGGTT___AACC_
18._LCT_EEN_90
GGGGCCCTAAGGGGTTCCTTTTAACCGG
19._LCT_EEN_90
GGGGCCCTAAGGGGTTCCTTTTAACCGG
20._LCT_EEN_90
GGGGCCCTAAGGGGTTCCTTTTAACCGG
21._LCT_EEN_90
GGGGCCCTAAGGGGTTCCTTTTAACCGG
22._LCT_EEN_90
GGGGCCCTAAGGGGTTCCTTTTAACCGG
23._LCT_EEN_90
GGGGCCCTAAGGGGTTCCTTTTAACCGG
24._LCT_EEN_90
GGGGCCCTAAGGGGTTCCTTTTAACCGG
25._LCT_EEN_90
GGGGCCCTAAGGGGTTCCTTTTAACCGG
26._LCT_EEN_90
GGGGCCCTAAGGGGTTCCTTTTAACCGG
27._LCT_EEN_90
GGGGCCCTAAGGGGTTCCTTTTAACCGG
28._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCTTTTAACCGG
29._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCTTTTAACCGG
30._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCTTTTAACCGG
31._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCTTTTAACCGG
32._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCTTTTAACCGG
33._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCTTTTAACCGG
34._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCTTTTAACCGG
35._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCTTTTAACCGG
36._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCTTTTAACCGG
37._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCTTTTAACCGG
38._POUND_10
GGGGCCCTAAGGGGTTCCTTTTAACCGG
39._POUND_10
GGGGCCCTAAGGGGTTCCTTTTAACCGG
40._POUND_10
GGGGCCCTAAGGGGTTCCTTTTAACCGG
41._GC-05-069-2-20
GGGGCCCTAAGGGGTTCCTTTTAACCGG
42._GC-05-069-2-20
GGGGCCCTAAGGGGTTCCTTTTAACCGG
43._GC-05-069-2-20
GGGGCCCTAAGGGGTTCCTTTTAACCGG
 2930313233343536373839   
_Input profile
ATCCCCGGTTCCCCTTCCGGCCX_XX_XX_X
1._RUQ_1638
ATCCCCGGTTCCCCTTCCGGCCX_XX_XX_X
2._RUQ_1638
ATCCCCGGTTCCCCTTCCGGCCX_XX_XX_X
3._RUQ_1638
___GG___TTCCGG_X_XX_XX_X
4._RUQ_1683
___GG___TTCCGG_X_XX_XX_X
5._UF_712
ATCCCCGGTTCCCCTTCCGGCCX_XX_XX_X
6._UF_712
TTCCCCGGTT_CCTTCCGGCCX_XX_XX_X
7._UF_712
TTCCCCGGTT_CCTTCCGGCCX_XX_XX_X
8._UF_712
TTCCCCGGTT_CCTTCCGGCCX_XX_XX_X
9._GC-01-089-5-06
TTCCCCGGTT_CCTTCCGGCCX_XX_XX_X
10._GC-01-089-5-06
TTCCCCGGTT_CCTTCCGGCCX_XX_XX_X
11._GC-01-089-5-06
TTCCCCGGTT_CCTTCCGGCCX_XX_XX_X
12._UF_712
TTCCCCGGTT_CCTT_GGCCX_XX_XX_X
13._GC-01-089-5-06
TTCCCCGGTT_CCTT_GGCCX_XX_XX_X
14._LCT_EEN_90
TT-CTGGTTCCCCTTCCGGCCX_XX_XX_X
15._LCT_EEN_90
TT_CTGGTTCCCCTTCCGGCCX_XX_XX_X
16._RUQ_1379
___GT___TTCCGG_X_XX_XX_X
17._RUQ_469
___GT___TTCCGG_X_XX_XX_X
18._LCT_EEN_90
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
19._LCT_EEN_90
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
20._LCT_EEN_90
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
21._LCT_EEN_90
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
22._LCT_EEN_90
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
23._LCT_EEN_90
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
24._LCT_EEN_90
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
25._LCT_EEN_90
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
26._LCT_EEN_90
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
27._LCT_EEN_90
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
28._GC-08-089-2-12
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
29._GC-08-089-2-12
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
30._GC-08-089-2-12
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
31._GC-08-089-2-12
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
32._GC-08-089-2-12
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
33._GC-08-089-2-12
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
34._GC-08-089-2-12
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
35._GC-08-089-2-12
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
36._GC-08-089-2-12
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
37._GC-08-089-2-12
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
38._POUND_10
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
39._POUND_10
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
40._POUND_10
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
41._GC-05-069-2-20
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
42._GC-05-069-2-20
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X
43._GC-05-069-2-20
TTCCCTGGTT_CCTTCCGGCCX_XX_XX_X

Input profile: UF_712

 
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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._UF_712 RUQ_1638

identical
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._UF_712 RUQ_1638

identical
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._UF_712 RUQ_1638

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._UF_712 RUQ_1683

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._UF_712

97.4 %
38 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 6 Row 39 34_36
 Dapeng Zhang, 2016

6._UF_712

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

7._UF_712

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 2
 Dapeng Zhang, 2016

8._UF_712

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 4
 Dapeng Zhang, 2016

9._UF_712 GC-01-089-5-06

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._UF_712 GC-01-089-5-06

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._UF_712 GC-01-089-5-06

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

12._UF_712

95.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 3
 Dapeng Zhang, 2016

13._UF_712 GC-01-089-5-06

95.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._LCT_EEN_90

95.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 143 T3
 Dapeng Zhang, 2014

15._LCT_EEN_90

95.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 143 T3
 Dapeng Zhang, 2016

16._AM_1_/57_[POU] RUQ_1379

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._AM_1_/8_[POU] RUQ_469

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._LCT_EEN_90

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 4 > FP
 Dapeng Zhang, 2016

19._LCT_EEN_90

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 3 > FP
 Dapeng Zhang, 2016

20._LCT_EEN_90

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 2 > FP
 Dapeng Zhang, 2016

21._LCT_EEN_90

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 1 > FP
 Dapeng Zhang, 2016

22._LCT_EEN_90

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 10
 Dapeng Zhang, 2016

23._LCT_EEN_90

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 9
 Dapeng Zhang, 2016

24._LCT_EEN_90

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 8
 Dapeng Zhang, 2016

25._LCT_EEN_90

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 7
 Dapeng Zhang, 2016

26._LCT_EEN_90

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 6
 Dapeng Zhang, 2016

27._LCT_EEN_90

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

28._LCT_EEN_90 GC-08-089-2-12

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

29._LCT_EEN_90 GC-08-089-2-12

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

30._LCT_EEN_90 GC-08-089-2-12

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

31._LCT_EEN_90 GC-08-089-2-12

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

32._LCT_EEN_90 GC-08-089-2-12

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

33._LCT_EEN_90 GC-08-089-2-12

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

34._LCT_EEN_90 GC-08-089-2-12

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

35._LCT_EEN_90 GC-08-089-2-12

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

36._LCT_EEN_90 GC-08-089-2-12

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

37._LCT_EEN_90 GC-08-089-2-12

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

38._POUND_10

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5220 3
 Dapeng Zhang, 2016

39._POUND_10

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5220 1 > FP
 Dapeng Zhang, 2016

40._POUND_10

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5220 4 > FP
 Dapeng Zhang, 2016

41._POUND_10 GC-05-069-2-20

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

42._POUND_10 GC-05-069-2-20

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

43._POUND_10 GC-05-069-2-20

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520